[INFO] fetching crate kira-protein-longevity-analysis 0.1.0...
[INFO] testing kira-protein-longevity-analysis-0.1.0 against try#0abe69e6c16114311cc2700e972492e64d69c28f for pr-154065-1
[INFO] extracting crate kira-protein-longevity-analysis 0.1.0 into /workspace/builds/worker-1-tc2/source
[INFO] started tweaking crates.io crate kira-protein-longevity-analysis 0.1.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate kira-protein-longevity-analysis 0.1.0
[INFO] tweaked toml for crates.io crate kira-protein-longevity-analysis 0.1.0 written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate kira-protein-longevity-analysis 0.1.0 on toolchain 0abe69e6c16114311cc2700e972492e64d69c28f
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0abe69e6c16114311cc2700e972492e64d69c28f" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate kira-protein-longevity-analysis 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0abe69e6c16114311cc2700e972492e64d69c28f" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+0abe69e6c16114311cc2700e972492e64d69c28f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a8d851b2e0f29d8dfa1563e5d128762bfac6f91f95d5ac47cc51267b4ceb76cb
[INFO] running `Command { std: "docker" "start" "-a" "a8d851b2e0f29d8dfa1563e5d128762bfac6f91f95d5ac47cc51267b4ceb76cb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a8d851b2e0f29d8dfa1563e5d128762bfac6f91f95d5ac47cc51267b4ceb76cb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a8d851b2e0f29d8dfa1563e5d128762bfac6f91f95d5ac47cc51267b4ceb76cb", kill_on_drop: false }`
[INFO] [stdout] a8d851b2e0f29d8dfa1563e5d128762bfac6f91f95d5ac47cc51267b4ceb76cb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+0abe69e6c16114311cc2700e972492e64d69c28f" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f128aafb61a3dab28e6152cd8e0d6a2224aebc4c697007071ff36ca1c6f4d134
[INFO] running `Command { std: "docker" "start" "-a" "f128aafb61a3dab28e6152cd8e0d6a2224aebc4c697007071ff36ca1c6f4d134", kill_on_drop: false }`
[INFO] [stderr]    Compiling quote v1.0.43
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling colorchoice v1.0.4
[INFO] [stderr]    Compiling anstyle v1.0.13
[INFO] [stderr]    Compiling anstyle-query v1.1.5
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling zmij v1.0.16
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling anstyle-parse v0.2.7
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling clap_lex v0.7.7
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]    Compiling clap_builder v4.5.54
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]    Compiling kira-mmcif v0.1.0
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling clap v4.5.54
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling kira-protein-longevity-analysis v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Structure`
[INFO] [stdout]  --> src/io/mmcif.rs:2:50
[INFO] [stdout]   |
[INFO] [stdout] 2 | use kira_mmcif::{AtomName, ChainId, ResidueName, Structure, read_structure};
[INFO] [stdout]   |                                                  ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `std::arch::x86_64::_mm256_loadu_ps` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/simd/avx2.rs:31:18
[INFO] [stdout]    |
[INFO] [stdout] 31 |         let vx = _mm256_loadu_ps(xs.as_ptr());
[INFO] [stdout]    |                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] note: an unsafe function restricts its caller, but its body is safe by default
[INFO] [stdout]   --> src/simd/avx2.rs:7:1
[INFO] [stdout]    |
[INFO] [stdout]  7 | / pub unsafe fn count_within_cutoff_avx2(
[INFO] [stdout]  8 | |     positions: &SoaPositions,
[INFO] [stdout]  9 | |     i: usize,
[INFO] [stdout] 10 | |     candidates: &[usize],
[INFO] [stdout] 11 | |     cutoff2: f32,
[INFO] [stdout] 12 | | ) -> usize {
[INFO] [stdout]    | |__________^
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2024/unsafe-op-in-unsafe-fn.html>
[INFO] [stdout]    = note: `#[warn(unsafe_op_in_unsafe_fn)]` (part of `#[warn(rust_2024_compatibility)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `std::arch::x86_64::_mm256_loadu_ps` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/simd/avx2.rs:32:18
[INFO] [stdout]    |
[INFO] [stdout] 32 |         let vy = _mm256_loadu_ps(ys.as_ptr());
[INFO] [stdout]    |                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2024/unsafe-op-in-unsafe-fn.html>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `std::arch::x86_64::_mm256_loadu_ps` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/simd/avx2.rs:33:18
[INFO] [stdout]    |
[INFO] [stdout] 33 |         let vz = _mm256_loadu_ps(zs.as_ptr());
[INFO] [stdout]    |                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2024/unsafe-op-in-unsafe-fn.html>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `cell_size` is never read
[INFO] [stdout]   --> src/pipeline/grid.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout]  9 | pub struct Grid {
[INFO] [stdout]    |            ---- field in this struct
[INFO] [stdout] 10 |     cell_size: f32,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Grid` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0133`.
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 31.81s
[INFO] running `Command { std: "docker" "inspect" "f128aafb61a3dab28e6152cd8e0d6a2224aebc4c697007071ff36ca1c6f4d134", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f128aafb61a3dab28e6152cd8e0d6a2224aebc4c697007071ff36ca1c6f4d134", kill_on_drop: false }`
[INFO] [stdout] f128aafb61a3dab28e6152cd8e0d6a2224aebc4c697007071ff36ca1c6f4d134
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+0abe69e6c16114311cc2700e972492e64d69c28f" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ef8a5245a6c2c9839f595569fcc80cf1fc26b030d4609266f77da8e0070e431f
[INFO] running `Command { std: "docker" "start" "-a" "ef8a5245a6c2c9839f595569fcc80cf1fc26b030d4609266f77da8e0070e431f", kill_on_drop: false }`
[INFO] [stdout] warning: unused import: `Structure`
[INFO] [stdout]  --> src/io/mmcif.rs:2:50
[INFO] [stdout]   |
[INFO] [stdout] 2 | use kira_mmcif::{AtomName, ChainId, ResidueName, Structure, read_structure};
[INFO] [stdout]   |                                                  ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `std::arch::x86_64::_mm256_loadu_ps` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/simd/avx2.rs:31:18
[INFO] [stdout]    |
[INFO] [stdout] 31 |         let vx = _mm256_loadu_ps(xs.as_ptr());
[INFO] [stdout]    |                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] note: an unsafe function restricts its caller, but its body is safe by default
[INFO] [stdout]   --> src/simd/avx2.rs:7:1
[INFO] [stdout]    |
[INFO] [stdout]  7 | / pub unsafe fn count_within_cutoff_avx2(
[INFO] [stdout]  8 | |     positions: &SoaPositions,
[INFO] [stdout]  9 | |     i: usize,
[INFO] [stdout] 10 | |     candidates: &[usize],
[INFO] [stdout] 11 | |     cutoff2: f32,
[INFO] [stdout] 12 | | ) -> usize {
[INFO] [stdout]    | |__________^
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2024/unsafe-op-in-unsafe-fn.html>
[INFO] [stdout]    = note: `#[warn(unsafe_op_in_unsafe_fn)]` (part of `#[warn(rust_2024_compatibility)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `std::arch::x86_64::_mm256_loadu_ps` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/simd/avx2.rs:32:18
[INFO] [stdout]    |
[INFO] [stdout] 32 |         let vy = _mm256_loadu_ps(ys.as_ptr());
[INFO] [stdout]    |                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2024/unsafe-op-in-unsafe-fn.html>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling kira-protein-longevity-analysis v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning[E0133]: call to unsafe function `std::arch::x86_64::_mm256_loadu_ps` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/simd/avx2.rs:33:18
[INFO] [stdout]    |
[INFO] [stdout] 33 |         let vz = _mm256_loadu_ps(zs.as_ptr());
[INFO] [stdout]    |                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2024/unsafe-op-in-unsafe-fn.html>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `cell_size` is never read
[INFO] [stdout]   --> src/pipeline/grid.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout]  9 | pub struct Grid {
[INFO] [stdout]    |            ---- field in this struct
[INFO] [stdout] 10 |     cell_size: f32,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Grid` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0133`.
[INFO] [stdout] 
[INFO] [stdout] error[E0603]: module `stage1_normalize` is private
[INFO] [stdout]  --> tests/ph_score_monotonic.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 |     stage1_normalize, stage2_contacts, stage3_exposure, stage4_strain, stage5_ph_electrostatics,
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^ private module
[INFO] [stdout]   |
[INFO] [stdout] note: the module `stage1_normalize` is defined here
[INFO] [stdout]  --> src/pipeline/mod.rs:3:1
[INFO] [stdout]   |
[INFO] [stdout] 3 | mod stage1_normalize;
[INFO] [stdout]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0603]: module `stage2_contacts` is private
[INFO] [stdout]  --> tests/ph_score_monotonic.rs:4:23
[INFO] [stdout]   |
[INFO] [stdout] 4 |     stage1_normalize, stage2_contacts, stage3_exposure, stage4_strain, stage5_ph_electrostatics,
[INFO] [stdout]   |                       ^^^^^^^^^^^^^^^ private module
[INFO] [stdout]   |
[INFO] [stdout] note: the module `stage2_contacts` is defined here
[INFO] [stdout]  --> src/pipeline/mod.rs:4:1
[INFO] [stdout]   |
[INFO] [stdout] 4 | mod stage2_contacts;
[INFO] [stdout]   | ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0603]: module `stage3_exposure` is private
[INFO] [stdout]  --> tests/ph_score_monotonic.rs:4:40
[INFO] [stdout]   |
[INFO] [stdout] 4 |     stage1_normalize, stage2_contacts, stage3_exposure, stage4_strain, stage5_ph_electrostatics,
[INFO] [stdout]   |                                        ^^^^^^^^^^^^^^^ private module
[INFO] [stdout]   |
[INFO] [stdout] note: the module `stage3_exposure` is defined here
[INFO] [stdout]  --> src/pipeline/mod.rs:5:1
[INFO] [stdout]   |
[INFO] [stdout] 5 | mod stage3_exposure;
[INFO] [stdout]   | ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0603]: module `stage4_strain` is private
[INFO] [stdout]  --> tests/ph_score_monotonic.rs:4:57
[INFO] [stdout]   |
[INFO] [stdout] 4 |     stage1_normalize, stage2_contacts, stage3_exposure, stage4_strain, stage5_ph_electrostatics,
[INFO] [stdout]   |                                                         ^^^^^^^^^^^^^ private module
[INFO] [stdout]   |
[INFO] [stdout] note: the module `stage4_strain` is defined here
[INFO] [stdout]  --> src/pipeline/mod.rs:6:1
[INFO] [stdout]   |
[INFO] [stdout] 6 | mod stage4_strain;
[INFO] [stdout]   | ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0603]: module `stage5_ph_electrostatics` is private
[INFO] [stdout]  --> tests/ph_score_monotonic.rs:4:72
[INFO] [stdout]   |
[INFO] [stdout] 4 |     stage1_normalize, stage2_contacts, stage3_exposure, stage4_strain, stage5_ph_electrostatics,
[INFO] [stdout]   |                                                                        ^^^^^^^^^^^^^^^^^^^^^^^^ private module
[INFO] [stdout]   |
[INFO] [stdout] note: the module `stage5_ph_electrostatics` is defined here
[INFO] [stdout]  --> src/pipeline/mod.rs:7:1
[INFO] [stdout]   |
[INFO] [stdout] 7 | mod stage5_ph_electrostatics;
[INFO] [stdout]   | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0603]: module `stage6_ros` is private
[INFO] [stdout]  --> tests/ph_score_monotonic.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 |     stage6_ros, stage7_temp, stage8_score,
[INFO] [stdout]   |     ^^^^^^^^^^ private module
[INFO] [stdout]   |
[INFO] [stdout] note: the module `stage6_ros` is defined here
[INFO] [stdout]  --> src/pipeline/mod.rs:8:1
[INFO] [stdout]   |
[INFO] [stdout] 8 | mod stage6_ros;
[INFO] [stdout]   | ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0603]: module `stage7_temp` is private
[INFO] [stdout]  --> tests/ph_score_monotonic.rs:5:17
[INFO] [stdout]   |
[INFO] [stdout] 5 |     stage6_ros, stage7_temp, stage8_score,
[INFO] [stdout]   |                 ^^^^^^^^^^^ private module
[INFO] [stdout]   |
[INFO] [stdout] note: the module `stage7_temp` is defined here
[INFO] [stdout]  --> src/pipeline/mod.rs:9:1
[INFO] [stdout]   |
[INFO] [stdout] 9 | mod stage7_temp;
[INFO] [stdout]   | ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0603]: module `stage8_score` is private
[INFO] [stdout]   --> tests/ph_score_monotonic.rs:5:30
[INFO] [stdout]    |
[INFO] [stdout]  5 |     stage6_ros, stage7_temp, stage8_score,
[INFO] [stdout]    |                              ^^^^^^^^^^^^ private module
[INFO] [stdout]    |
[INFO] [stdout] note: the module `stage8_score` is defined here
[INFO] [stdout]   --> src/pipeline/mod.rs:10:1
[INFO] [stdout]    |
[INFO] [stdout] 10 | mod stage8_score;
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Structure`
[INFO] [stdout]  --> src/io/mmcif.rs:2:50
[INFO] [stdout]   |
[INFO] [stdout] 2 | use kira_mmcif::{AtomName, ChainId, ResidueName, Structure, read_structure};
[INFO] [stdout]   |                                                  ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `super::*`
[INFO] [stdout]   --> src/pipeline/stage9_output.rs:76:9
[INFO] [stdout]    |
[INFO] [stdout] 76 |     use super::*;
[INFO] [stdout]    |         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0603`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `kira-protein-longevity-analysis` (test "ph_score_monotonic") due to 8 previous errors
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] warning[E0133]: call to unsafe function `std::arch::x86_64::_mm256_loadu_ps` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/simd/avx2.rs:31:18
[INFO] [stdout]    |
[INFO] [stdout] 31 |         let vx = _mm256_loadu_ps(xs.as_ptr());
[INFO] [stdout]    |                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] note: an unsafe function restricts its caller, but its body is safe by default
[INFO] [stdout]   --> src/simd/avx2.rs:7:1
[INFO] [stdout]    |
[INFO] [stdout]  7 | / pub unsafe fn count_within_cutoff_avx2(
[INFO] [stdout]  8 | |     positions: &SoaPositions,
[INFO] [stdout]  9 | |     i: usize,
[INFO] [stdout] 10 | |     candidates: &[usize],
[INFO] [stdout] 11 | |     cutoff2: f32,
[INFO] [stdout] 12 | | ) -> usize {
[INFO] [stdout]    | |__________^
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2024/unsafe-op-in-unsafe-fn.html>
[INFO] [stdout]    = note: `#[warn(unsafe_op_in_unsafe_fn)]` (part of `#[warn(rust_2024_compatibility)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `std::arch::x86_64::_mm256_loadu_ps` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/simd/avx2.rs:32:18
[INFO] [stdout]    |
[INFO] [stdout] 32 |         let vy = _mm256_loadu_ps(ys.as_ptr());
[INFO] [stdout]    |                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2024/unsafe-op-in-unsafe-fn.html>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `std::arch::x86_64::_mm256_loadu_ps` is unsafe and requires unsafe block
[INFO] [stdout]   --> src/simd/avx2.rs:33:18
[INFO] [stdout]    |
[INFO] [stdout] 33 |         let vz = _mm256_loadu_ps(zs.as_ptr());
[INFO] [stdout]    |                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ call to unsafe function
[INFO] [stdout]    |
[INFO] [stdout]    = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2024/unsafe-op-in-unsafe-fn.html>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `cell_size` is never read
[INFO] [stdout]   --> src/pipeline/grid.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout]  9 | pub struct Grid {
[INFO] [stdout]    |            ---- field in this struct
[INFO] [stdout] 10 |     cell_size: f32,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Grid` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0133`.
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "ef8a5245a6c2c9839f595569fcc80cf1fc26b030d4609266f77da8e0070e431f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ef8a5245a6c2c9839f595569fcc80cf1fc26b030d4609266f77da8e0070e431f", kill_on_drop: false }`
[INFO] [stdout] ef8a5245a6c2c9839f595569fcc80cf1fc26b030d4609266f77da8e0070e431f
